Research Group Data Inspection

People

Dr. Swetlana Friedel
Dr. Michael Seifert
Dr. Jens Keilwagen

Research Topics

• Analysis of genomic sequences:
  • Discriminative motive discovery, ChIP-chip/aCGH signal segmentation.

• Analysis of gene/protein expression data:
  • Clustering, classification, biomarker detection.

Projects

• HMM-based analysis of Array-CGH data
  • Array-based Genome Comparison of Arabidopsis Ecotypes Using Hidden Markov Models [ Homepage ]

• Jstacs - Java framework for statistical analysis and classification of biological sequences [ Homepage ]
  • Dispom [ Homepage ]
  • GenDisMix [ Homepage ]
  • MotifAdjuster [ Homepage ]

• HMM-based analysis of ChIP-chip data
  • Utilizing promoter pair orientations [ Homepage ]

• SARDUX - Supervised attribute relevance detection using cross comparisons 
  • Application to ADMET prediction [ Homepage ]

• HiT-MDS - High-throughput multidimensional scaling 
  • Implementations in CUDA, R, and MATLAB/GNU Octave [ Homepage ]

• Sorting of high-dimensional data in Microsoft Excel
  • Using one-dimensional Self-Organizing maps (SOM). In German [ Heimatseite ]

References

• A searchable HTML list of references can be found here [ here ]
  • List of references for download in [ BibTeX Format ]