Research Group Data Inspection

Logo Data Inspection Group

People

Dr. Swetlana Friedel
Dr. Michael Seifert
Dr. Jens Keilwagen

Students   
Thilo Fester (GPU Programming)
Michael Scharfe (HMMs/phylog.trees)
   Alumni
   Dipl. Bioinf. Berit Haldemann (Documentation)
   Eric Rossa (VBA/Excel add-on)
   Dr. Marc Strickert

Research Topics

  • Analysis of genomic sequences:
    • Discriminative motive discovery, ChIP-chip/aCGH signal segmentation.
  • Analysis of gene/protein expression data:
    • Clustering, classification, biomarker detection.

Projects

  • HMM-based analysis of Array-CGH data
    • Array-based Genome Comparison of Arabidopsis Ecotypes Using Hidden Markov Models [ Homepage ]
  • Jstacs - Java framework for statistical analysis and classification of biological sequences [ Homepage ]
  • HMM-based analysis of ChIP-chip data
    • Utilizing promoter pair orientations [ Homepage ]
  • SARDUX - Supervised attribute relevance detection using cross comparisons 
    • Application to ADMET prediction [ Homepage ]
  • HiT-MDS - High-throughput multidimensional scaling 
    • Implementations in CUDA, R, and MATLAB/GNU Octave [ Homepage ]
  • Sorting of high-dimensional data in Microsoft Excel
    • Using one-dimensional Self-Organizing maps (SOM). In German [ Heimatseite ]

References

  • A searchable HTML list of references can be found here [ here ]

 

Publications and General Information
Logo IPK Gatersleben
[ IPK Gatersleben ]
Bioinformatics@IPK
Logo Bioinformatics@IPK
[ Bioinformatics@IPK ]
Partner
Logo MLU Halle
[ Bioinformatics | Mustererkennung ]
@ [ Universität Halle ]

This work is kindly supported by the Ministry of Cultural Affairs
[ WZW Wissenschaftszentrum Sachsen-Anhalt ]
Grant: XP3624HP/0606T
Last change: 23 Mar 2009